main package

The latest version (v2.0.0) can be downloaded from here.

Users can download the cutting edge version from GitHub by git clone git@github.com:WGLab/uroborus.git.

example files

Several example files are provided below to help users test the software:

1. The alignment index file (-index): BowtieIndex files (Homo_sapiens, hg19 version)can be downloaded from http://ccb.jhu.edu/software/tophat/igenomes.shtml
2. The genome annotation file (-gtf): gtf file
3. The genome sequence file (-fasta): fasta file
4. Input file -- The unmapped SAM format file (rar file): unmapped sam file
5. Input file -- The accepted BAM format file (rar file): accepted bam file
6. Output file -- The reported circRNA list : circRNA list file

Note that the above first 3 files are from Homo_sapiens genome (hg19 version), other species genome files can be downloaded from http://ccb.jhu.edu/software/tophat/igenomes.shtml